PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_183_iso_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family MYB_related
Protein Properties Length: 122aa    MW: 13303.3 Da    PI: 4.8032
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_183_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.21.4e-111154445
                                       S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
                    Myb_DNA-binding  4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                                       W+ e d+ + +a + ++ +   +W++Ia+ ++ g++l+++k+++ 
  cra_locus_183_iso_1_len_927_ver_3 11 WSREQDKAFENALATYPEDtadRWEKIAADVP-GKSLEEIKHHYE 54
                                       ********************************.**********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007173.7E-8759IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-5956IPR009057Homeodomain-like
SuperFamilySSF466892.09E-12966IPR009057Homeodomain-like
PROSITE profilePS500906.8991157IPR017877Myb-like domain
PfamPF002493.3E-91154IPR001005SANT/Myb domain
CDDcd001678.21E-101157No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
MTADESISSM WSREQDKAFE NALATYPEDT ADRWEKIAAD VPGKSLEEIK HHYELLVDDV  60
SRIESGTVPL PCYTTASDGS SSHAGDEGSG KKGGNFGHFN SDSNHGGKAS RSDQERRKGI  120
AW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A6e-2111751175RADIALIS
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00500DAPTransfer from AT5G08520Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070471.19e-70PREDICTED: transcription factor DIVARICATA
RefseqXP_011070472.19e-70PREDICTED: transcription factor DIVARICATA
TrEMBLA0A068VFI46e-72A0A068VFI4_COFCA; Uncharacterized protein
STRINGPOPTR_0007s07150.14e-62(Populus trichocarpa)